Insights into Circovirus Host Range from the Genomic Fossil Record

Estimating diversification rates from the fossil record

Diversification rates are estimated from phylogenies, typically without fossils, except in paleontological studies. By nature, rate estimations depend heavily on the time data provided in phylogenies, which are divergence times and (when used) fossil ages. Among these temporal data, fossil ages are by far the most precisely known (divergence times are inferences calibrated with fossils). We pro...

Fossil embryos deep in the fossil record

Embryos have been found in ‘old’ rocks on four continents, especially in Siberia, Nevada, Australia and China. They have been discovered in sedimentary rocks of even Late Neoproterozoic age, assuming the evolutionary geological column1 (figure 1). The Neoproterozoic is the period, so called, between 1 billion and 550 million years ago. This discovery was in the Doushantuo Formation, Guizhou Pro...

The Primate Fossil Record

Genomic insights into positive selection.

The traditional way of identifying targets of adaptive evolution has been to study a few loci that one hypothesizes a priori to have been under selection. This approach is complicated because of the confounding effects that population demographic history and selection have on patterns of DNA sequence variation. In principle, multilocus analyses can facilitate robust inferences of selection at i...

Infectogenomics: Insights from the Host Genome into Infectious Diseases

Five years into the human postgenomic era, we are gaining considerable knowledge about host-pathogen interactions through host genomes. This "infectogenomics" approach should yield further insights into both diagnostic and therapeutic advances, as well as normal cellular function.